fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
- b -
bin_file :
raptor::build_arguments
,
raptor::upgrade_arguments
bin_indices :
raptor::hibf::chopper_pack_record
bin_path :
raptor::build_arguments
,
raptor::search_arguments
,
raptor::upgrade_arguments
bins :
raptor::build_arguments
bits :
raptor::build_arguments
- c -
cache_thresholds :
raptor::search_arguments
,
raptor::threshold::threshold_parameters
compressed :
raptor::build_arguments
,
raptor::search_arguments
,
raptor::upgrade_arguments
compute_minimiser :
raptor::build_arguments
- d -
data_layout_mode :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
,
raptor::raptor_index< data_t >
disable_cutoffs :
raptor::build_arguments
- e -
errors :
raptor::search_arguments
,
raptor::threshold::threshold_parameters
estimated_sizes :
raptor::hibf::chopper_pack_record
- f -
favourite_child :
raptor::hibf::node_data
filenames :
raptor::hibf::chopper_pack_record
fp_correction :
raptor::hibf::build_data< data_layout_mode >
fpr :
raptor::build_arguments
,
raptor::search_arguments
,
raptor::threshold::threshold_parameters
- h -
hash :
raptor::build_arguments
hibf :
raptor::hibf::build_data< data_layout_mode >
- i -
ibf_graph :
raptor::hibf::build_data< data_layout_mode >
ibf_number :
raptor::hibf::build_data< data_layout_mode >
ibf_vector :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
in_file :
raptor::upgrade_arguments
index_file :
raptor::search_arguments
is_hibf :
raptor::build_arguments
,
raptor::search_arguments
is_minimiser :
raptor::build_arguments
is_socks :
raptor::build_arguments
,
raptor::search_arguments
- k -
kmer_size :
raptor::build_arguments
,
raptor::upgrade_arguments
- m -
max_bin_index :
raptor::hibf::node_data
minimiser_begin :
raptor::threshold::forward_strand_minimiser
- n -
next_ibf_id :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
node_map :
raptor::hibf::build_data< data_layout_mode >
number_of_bins :
raptor::hibf::chopper_pack_record
number_of_ibfs :
raptor::hibf::build_data< data_layout_mode >
number_of_technical_bins :
raptor::hibf::node_data
number_of_user_bins :
raptor::hibf::build_data< data_layout_mode >
- o -
out_file :
raptor::search_arguments
,
raptor::upgrade_arguments
out_path :
raptor::build_arguments
output_directory :
raptor::threshold::threshold_parameters
- p -
p_max :
raptor::search_arguments
,
raptor::threshold::threshold_parameters
parent_bin_index :
raptor::hibf::node_data
parts :
raptor::build_arguments
,
raptor::search_arguments
,
raptor::upgrade_arguments
pattern_size :
raptor::search_arguments
,
raptor::threshold::threshold_parameters
pattern_size_strong :
raptor::search_arguments
percentage :
raptor::threshold::threshold_parameters
- q -
query_file :
raptor::search_arguments
- r -
remaining_records :
raptor::hibf::node_data
result_buffer :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
- s -
sequence_file_validator :
raptor::bin_validator
shape :
raptor::build_arguments
,
raptor::search_arguments
,
raptor::threshold::threshold_parameters
,
raptor::upgrade_arguments
shape_size :
raptor::search_arguments
shape_string :
raptor::build_arguments
shape_weight :
raptor::search_arguments
size :
raptor::build_arguments
- t -
tau :
raptor::search_arguments
,
raptor::threshold::threshold_parameters
threads :
raptor::build_arguments
,
raptor::search_arguments
threshold :
raptor::search_arguments
- u -
user_bin_number :
raptor::hibf::build_data< data_layout_mode >
user_bins :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
- v -
v :
raptor::pattern_size
,
raptor::window
version :
raptor::raptor_index< data_t >
- w -
window_size :
raptor::build_arguments
,
raptor::search_arguments
,
raptor::threshold::threshold_parameters
,
raptor::upgrade_arguments
window_size_strong :
raptor::build_arguments
write_time :
raptor::search_arguments
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