fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
File List
Here is a list of all files with brief descriptions:
[detail level
1
2
3
4
5
]
▼
include
▼
raptor
▼
argument_parsing
build_arguments.hpp
build_parsing.hpp
init_shared_meta.hpp
parse_bin_path.hpp
search_arguments.hpp
search_parsing.hpp
upgrade_arguments.hpp
upgrade_parsing.hpp
validators.hpp
▼
build
►
hibf
bin_prefixes.hpp
bin_size_in_bits.hpp
build_data.hpp
chopper_build.hpp
chopper_pack_record.hpp
compute_kmers.hpp
construct_ibf.hpp
create_ibfs_from_chopper_pack.hpp
hierarchical_build.hpp
initialise_max_bin_kmers.hpp
insert_into_ibf.hpp
loop_over_children.hpp
node_data.hpp
parse_chopper_pack_header.hpp
parse_chopper_pack_line.hpp
read_chopper_pack_file.hpp
update_user_bins.hpp
build_from_files.hpp
build_from_minimiser.hpp
call_parallel_on_bins.hpp
compute_minimiser.hpp
index_factory.hpp
raptor_build.hpp
store_index.hpp
▼
search
do_parallel.hpp
load_index.hpp
search.hpp
search_hibf.hpp
search_ibf.hpp
search_multiple.hpp
search_single.hpp
search_socks.hpp
sync_out.hpp
▼
threshold
forward_strand_minimiser.hpp
logspace.hpp
multiple_error_model.hpp
one_error_model.hpp
one_indirect_error_model.hpp
pascal_row.hpp
precompute_correction.hpp
precompute_threshold.hpp
threshold.hpp
threshold_parameters.hpp
▼
upgrade
upgrade.hpp
upgrade_index.hpp
adjust_seed.hpp
dna4_traits.hpp
hierarchical_interleaved_bloom_filter.hpp
index.hpp
raptor.hpp
strong_types.hpp
▼
src
▼
argument_parsing
build_parsing.cpp
init_shared_meta.cpp
parse_bin_path.cpp
search_parsing.cpp
upgrade_parsing.cpp
▼
build
▼
hibf
bin_size_in_bits.cpp
chopper_build.cpp
compute_kmers.cpp
construct_ibf.cpp
create_ibfs_from_chopper_pack.cpp
hierarchical_build.cpp
initialise_max_bin_kmers.cpp
insert_into_ibf.cpp
loop_over_children.cpp
parse_chopper_pack_header.cpp
parse_chopper_pack_line.cpp
read_chopper_pack_file.cpp
update_user_bins.cpp
build_from_minimiser.cpp
compute_minimiser.cpp
raptor_build.cpp
▼
search
raptor_search.cpp
search_hibf.cpp
search_ibf.cpp
search_multiple.cpp
search_socks.cpp
▼
threshold
multiple_error_model.cpp
one_error_model.cpp
one_indirect_error_model.cpp
pascal_row.cpp
precompute_correction.cpp
Provides stuff
precompute_threshold.cpp
Provides stuff
▼
upgrade
raptor_upgrade.cpp
raptor.cpp
Generated by
1.9.1