fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
initialise_max_bin_kmers.hpp
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1 // --------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
6 // --------------------------------------------------------------------------------------------------
7 
8 #pragma once
9 
10 #include <robin_hood.h>
11 
14 
15 namespace raptor::hibf
16 {
17 
18 template <seqan3::data_layout data_layout_mode>
19 size_t initialise_max_bin_kmers(robin_hood::unordered_flat_set<size_t> & kmers,
20  std::vector<int64_t> & ibf_positions,
21  std::vector<int64_t> & filename_indices,
22  lemon::ListDigraph::Node const & node,
23  build_data<data_layout_mode> & data,
24  build_arguments const & arguments);
25 
26 } // namespace raptor::hibf
Must be first include.
Definition: bin_prefixes.hpp:13
size_t initialise_max_bin_kmers(robin_hood::unordered_flat_set< size_t > &kmers, std::vector< int64_t > &ibf_positions, std::vector< int64_t > &filename_indices, lemon::ListDigraph::Node const &node, build_data< data_layout_mode > &data, build_arguments const &arguments)
Definition: initialise_max_bin_kmers.cpp:19