fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
dna4_traits.hpp
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1 // --------------------------------------------------------------------------------------------------
2 // Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
3 // Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
4 // This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5 // shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
6 // --------------------------------------------------------------------------------------------------
7 
8 #pragma once
9 
10 #include <seqan3/io/sequence_file/input.hpp>
11 
12 namespace raptor
13 {
14 
15 struct dna4_traits : seqan3::sequence_file_input_default_traits_dna
16 {
17  using sequence_alphabet = seqan3::dna4;
18 };
19 
20 } // namespace raptor
Definition: adjust_seed.hpp:13
Definition: dna4_traits.hpp:16
seqan3::dna4 sequence_alphabet
Definition: dna4_traits.hpp:17