fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
Namespaces | Functions
construct_ibf.cpp File Reference
#include <lemon/list_graph.h>
#include <raptor/build/hibf/bin_size_in_bits.hpp>
#include <raptor/build/hibf/construct_ibf.hpp>
#include <raptor/build/hibf/insert_into_ibf.hpp>

Namespaces

 raptor
 
 raptor::hibf
 Must be first include.
 

Functions

template<seqan3::data_layout data_layout_mode>
seqan3::interleaved_bloom_filter raptor::hibf::construct_ibf (robin_hood::unordered_flat_set< size_t > &parent_kmers, robin_hood::unordered_flat_set< size_t > &kmers, size_t const number_of_bins, lemon::ListDigraph::Node const &node, build_data< data_layout_mode > &data, build_arguments const &arguments, bool is_root)
 
template seqan3::interleaved_bloom_filter raptor::hibf::construct_ibf< seqan3::data_layout::uncompressed > (robin_hood::unordered_flat_set< size_t > &, robin_hood::unordered_flat_set< size_t > &, size_t const, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::uncompressed > &, build_arguments const &, bool)
 
template seqan3::interleaved_bloom_filter raptor::hibf::construct_ibf< seqan3::data_layout::compressed > (robin_hood::unordered_flat_set< size_t > &, robin_hood::unordered_flat_set< size_t > &, size_t const, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::compressed > &, build_arguments const &, bool)