fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
Namespaces | Functions
initialise_max_bin_kmers.cpp File Reference
#include <lemon/list_graph.h>
#include <raptor/build/hibf/compute_kmers.hpp>
#include <raptor/build/hibf/hierarchical_build.hpp>
#include <raptor/build/hibf/initialise_max_bin_kmers.hpp>
#include <raptor/build/hibf/update_user_bins.hpp>

Namespaces

 raptor
 
 raptor::hibf
 Must be first include.
 

Functions

template<seqan3::data_layout data_layout_mode>
size_t raptor::hibf::initialise_max_bin_kmers (robin_hood::unordered_flat_set< size_t > &kmers, std::vector< int64_t > &ibf_positions, std::vector< int64_t > &filename_indices, lemon::ListDigraph::Node const &node, build_data< data_layout_mode > &data, build_arguments const &arguments)
 
template size_t raptor::hibf::initialise_max_bin_kmers< seqan3::data_layout::uncompressed > (robin_hood::unordered_flat_set< size_t > &, std::vector< int64_t > &, std::vector< int64_t > &, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::uncompressed > &, build_arguments const &)
 
template size_t raptor::hibf::initialise_max_bin_kmers< seqan3::data_layout::compressed > (robin_hood::unordered_flat_set< size_t > &, std::vector< int64_t > &, std::vector< int64_t > &, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::compressed > &, build_arguments const &)