fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
Public Attributes | List of all members
raptor::build_arguments Struct Reference

#include <raptor/argument_parsing/build_arguments.hpp>

Public Attributes

uint8_t kmer_size {20u}
 
uint32_t window_size {kmer_size}
 
window window_size_strong {kmer_size}
 
std::string shape_string {}
 
seqan3::shape shape {seqan3::ungapped{kmer_size}}
 
bool compute_minimiser {false}
 
bool disable_cutoffs {false}
 
std::filesystem::path out_path {"./"}
 
std::string size {"1k"}
 
uint64_t bins {64}
 
uint64_t bits {4096}
 
uint64_t hash {2}
 
uint8_t parts {1u}
 
double fpr {0.05}
 
bool compressed {false}
 
std::vector< std::vector< std::string > > bin_path {}
 
std::filesystem::path bin_file {}
 
uint8_t threads {1u}
 
bool is_socks {false}
 
bool is_hibf {false}
 
bool is_minimiser {false}
 

Member Data Documentation

◆ bin_file

std::filesystem::path raptor::build_arguments::bin_file {}

◆ bin_path

std::vector<std::vector<std::string> > raptor::build_arguments::bin_path {}

◆ bins

uint64_t raptor::build_arguments::bins {64}

◆ bits

uint64_t raptor::build_arguments::bits {4096}

◆ compressed

bool raptor::build_arguments::compressed {false}

◆ compute_minimiser

bool raptor::build_arguments::compute_minimiser {false}

◆ disable_cutoffs

bool raptor::build_arguments::disable_cutoffs {false}

◆ fpr

double raptor::build_arguments::fpr {0.05}

◆ hash

uint64_t raptor::build_arguments::hash {2}

◆ is_hibf

bool raptor::build_arguments::is_hibf {false}

◆ is_minimiser

bool raptor::build_arguments::is_minimiser {false}

◆ is_socks

bool raptor::build_arguments::is_socks {false}

◆ kmer_size

uint8_t raptor::build_arguments::kmer_size {20u}

◆ out_path

std::filesystem::path raptor::build_arguments::out_path {"./"}

◆ parts

uint8_t raptor::build_arguments::parts {1u}

◆ shape

seqan3::shape raptor::build_arguments::shape {seqan3::ungapped{kmer_size}}

◆ shape_string

std::string raptor::build_arguments::shape_string {}

◆ size

std::string raptor::build_arguments::size {"1k"}

◆ threads

uint8_t raptor::build_arguments::threads {1u}

◆ window_size

uint32_t raptor::build_arguments::window_size {kmer_size}

◆ window_size_strong

window raptor::build_arguments::window_size_strong {kmer_size}

The documentation for this struct was generated from the following file: