fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
- a -
add() :
raptor::logspace
- b -
bin_size_in_bits() :
raptor::hibf
build_from_files() :
raptor
build_from_minimiser() :
raptor
build_parsing() :
raptor
- c -
call_parallel_on_bins() :
raptor
check_for_fasta_format() :
raptor
chopper_build() :
raptor::hibf
chopper_build< seqan3::data_layout::compressed >() :
raptor::hibf
chopper_build< seqan3::data_layout::uncompressed >() :
raptor::hibf
compute_kmers() :
raptor::hibf
compute_minimiser() :
raptor
construct_ibf() :
raptor::hibf
construct_ibf< seqan3::data_layout::compressed >() :
raptor::hibf
construct_ibf< seqan3::data_layout::uncompressed >() :
raptor::hibf
correction_filename() :
raptor::threshold
create_ibfs_from_chopper_pack() :
raptor::hibf
create_ibfs_from_chopper_pack< seqan3::data_layout::compressed >() :
raptor::hibf
create_ibfs_from_chopper_pack< seqan3::data_layout::uncompressed >() :
raptor::hibf
- d -
do_parallel() :
raptor
- h -
hierarchical_build() :
raptor::hibf
hierarchical_build< seqan3::data_layout::compressed >() :
raptor::hibf
hierarchical_build< seqan3::data_layout::uncompressed >() :
raptor::hibf
- i -
impl() :
raptor::threshold
init_build_parser() :
raptor
init_search_parser() :
raptor
init_shared_meta() :
raptor
init_top_level_parser() :
raptor
init_upgrade_parser() :
raptor
initialise_max_bin_kmers() :
raptor::hibf
initialise_max_bin_kmers< seqan3::data_layout::compressed >() :
raptor::hibf
initialise_max_bin_kmers< seqan3::data_layout::uncompressed >() :
raptor::hibf
insert_into_ibf() :
raptor::hibf
- l -
load_index() :
raptor
loop_over_children() :
raptor::hibf
loop_over_children< seqan3::data_layout::compressed >() :
raptor::hibf
loop_over_children< seqan3::data_layout::uncompressed >() :
raptor::hibf
- m -
multiple_error_model() :
raptor::threshold
- o -
one_error_model() :
raptor::threshold
one_indirect_error_model() :
raptor::threshold
operator<<() :
raptor
operator>>() :
raptor
- p -
parse_bin_path() :
raptor::detail
,
raptor
parse_chopper_pack_header() :
raptor::hibf
parse_chopper_pack_line() :
raptor::hibf
pascal_row() :
raptor::threshold
precompute_correction() :
raptor::threshold
precompute_threshold() :
raptor::threshold
- r -
raptor_build() :
raptor
raptor_search() :
raptor
raptor_upgrade() :
raptor
read_chopper_pack_file() :
raptor::hibf
read_chopper_pack_file< seqan3::data_layout::compressed >() :
raptor::hibf
read_chopper_pack_file< seqan3::data_layout::uncompressed >() :
raptor::hibf
read_correction() :
raptor::threshold
read_thresholds() :
raptor::threshold
run_build() :
raptor
run_search() :
raptor
- s -
search_hibf() :
raptor
search_hibf< false >() :
raptor
search_hibf< true >() :
raptor
search_ibf() :
raptor
search_ibf< false >() :
raptor
search_ibf< true >() :
raptor
search_multiple() :
raptor
search_multiple< false >() :
raptor
search_multiple< true >() :
raptor
search_parsing() :
raptor
search_single() :
raptor
search_socks() :
raptor
search_socks< false >() :
raptor
search_socks< true >() :
raptor
substract() :
raptor::logspace
- t -
threshold_filename() :
raptor::threshold
- u -
update_user_bins() :
raptor::hibf
update_user_bins< seqan3::data_layout::compressed >() :
raptor::hibf
update_user_bins< seqan3::data_layout::uncompressed >() :
raptor::hibf
upgrade_index() :
raptor
upgrade_parsing() :
raptor
- w -
write_correction() :
raptor::threshold
write_thresholds() :
raptor::threshold
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