fastq_to_fasta
A template for creation of SeqAn3 apps, with a FASTQ to FASTA example app.
- b -
bin_indices_of_ibf() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
bin_path() :
raptor::raptor_index< data_t >
bin_validator() :
raptor::bin_validator
bulk_contains() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
bulk_count() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
- c -
compressed() :
raptor::raptor_index< data_t >
compute() :
raptor::threshold::forward_strand_minimiser
compute_fp_correction() :
raptor::hibf::build_data< data_layout_mode >
counting_agent_type() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
- f -
filename_index() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
filename_of_user_bin() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
forward_strand_minimiser() :
raptor::threshold::forward_strand_minimiser
- g -
get() :
raptor::threshold::threshold
get_help_page_message() :
raptor::bin_validator
,
raptor::positive_integer_validator
,
raptor::power_of_two_validator
,
raptor::size_validator
- h -
hierarchical_interleaved_bloom_filter() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
- i -
ibf() :
raptor::raptor_index< data_t >
index_factory() :
raptor::index_factory< compressed >
- m -
make_threshold_parameters() :
raptor::search_arguments
membership_agent() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
- n -
num_user_bins() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
- o -
operator!=() :
raptor::hibf::chopper_pack_record
,
raptor::hibf::node_data
operator()() :
raptor::bin_validator
,
raptor::index_factory< compressed >
,
raptor::logspace::add_fn
,
raptor::positive_integer_validator
,
raptor::power_of_two_validator
,
raptor::size_validator
operator<<() :
raptor::sync_out
operator=() :
raptor::bin_validator
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
,
raptor::index_factory< compressed >
,
raptor::positive_integer_validator
,
raptor::raptor_index< data_t >
,
raptor::size_validator
,
raptor::sync_out
,
raptor::threshold::forward_strand_minimiser
,
raptor::threshold::threshold
operator==() :
raptor::hibf::chopper_pack_record
,
raptor::hibf::node_data
operator[]() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
- p -
parts() :
raptor::raptor_index< data_t >
positive_integer_validator() :
raptor::positive_integer_validator
- r -
raptor_index() :
raptor::raptor_index< data_t >
request_ibf_idx() :
raptor::hibf::build_data< data_layout_mode >
request_user_bin_idx() :
raptor::hibf::build_data< data_layout_mode >
resize() :
raptor::hibf::build_data< data_layout_mode >
,
raptor::threshold::forward_strand_minimiser
- s -
set_ibf_count() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
set_user_bin_count() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
shape() :
raptor::raptor_index< data_t >
size_validator() :
raptor::size_validator
sync_out() :
raptor::sync_out
- t -
threshold() :
raptor::threshold::threshold
- w -
window_size() :
raptor::raptor_index< data_t >
write() :
raptor::sync_out
write_filenames() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
- ~ -
~bin_validator() :
raptor::bin_validator
~counting_agent_type() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
~forward_strand_minimiser() :
raptor::threshold::forward_strand_minimiser
~hierarchical_interleaved_bloom_filter() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
~index_factory() :
raptor::index_factory< compressed >
~membership_agent() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
~positive_integer_validator() :
raptor::positive_integer_validator
~raptor_index() :
raptor::raptor_index< data_t >
~size_validator() :
raptor::size_validator
~sync_out() :
raptor::sync_out
~threshold() :
raptor::threshold::threshold
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